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@Genentech

Genentech

Dedicated to pursuing groundbreaking science to discover and develop medicines

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  1. BRAID BRAID Public

    BRAID is a department within Genentech dedicated to advancing biological and clinical sciences through artificial intelligence.

    227 9

  2. scimilarity scimilarity Public

    A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training.

    Python 248 28

  3. gReLU gReLU Public

    gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.

    Python 325 54

  4. SpatialAgent SpatialAgent Public

    An AI agent for spatial biology

    Python 184 25

  5. equifold equifold Public

    Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation

    Python 129 19

  6. gneprop gneprop Public

    GNEprop is a graph neural network-based model to predict antibacterial activity from molecular structures in virtual screening settings.

    Jupyter Notebook 45 5

Repositories

Showing 10 of 147 repositories
  • scallops Public

    SCALLOPS (Scalable Library for Optical Pooled Screens) is a comprehensive Python package designed to streamline and scale the analysis of Optical Pooled Screens (OPS) for biological data.

    Genentech/scallops’s past year of commit activity
    Python 5 0 0 2 Updated Jun 1, 2026
  • openfe_skill Public
    Genentech/openfe_skill’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Jun 1, 2026
  • decima Public

    Decima is a Python library to train sequence models on single-cell RNA-seq data.

    Genentech/decima’s past year of commit activity
    Python 71 9 1 2 Updated Jun 1, 2026
  • jmpost Public
    Genentech/jmpost’s past year of commit activity
    R 17 4 37 2 Updated Jun 1, 2026
  • rdborrow Public

    External Control Borrowing for Rare Disease Simulation and Analysis

    Genentech/rdborrow’s past year of commit activity
    R 0 0 4 0 Updated May 30, 2026
  • SIGnature Public

    SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) datasets through precomputed gene attribution scores.

    Genentech/SIGnature’s past year of commit activity
    Python 30 4 0 0 Updated May 27, 2026
  • Orion Public
    Genentech/Orion’s past year of commit activity
    Python 1 MIT 0 0 0 Updated May 26, 2026
  • inSeqAPI_Offline Public
    Genentech/inSeqAPI_Offline’s past year of commit activity
    C# 1 MIT 0 0 0 Updated May 26, 2026
  • struct2query Public

    Struct2Query: Generates composite molecule queries for virtual screening by searching structurally similar protein binding sites and constructing ROCS queries from retrieved ligands.

    Genentech/struct2query’s past year of commit activity
    Python 4 MIT 0 0 0 Updated May 26, 2026
  • sp_pipeline_public Public
    Genentech/sp_pipeline_public’s past year of commit activity
    Python 1 MIT 0 0 0 Updated May 23, 2026
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People

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